Designing own scripts for batch¶
You can design your own script for launching a notebook in batch mode,
taking e.g. script basic.sh
as an
example. You should adopt the recommended structure described
here. You may need to know a bit of
Yaml syntax
You should better have your own version of file
common_parameters.yaml
, and either put in in the directory you are
launching your script from, or explicitly provide its path as 5th
argument of the call to job_pm.sh. Otherwise, the file installed with
CAMMAC (in dir jobs/) will be used (see
common_parameters.yaml
Anyway, you can supersede the settings of common_parameters.yaml by similar settings in your script
Remember also that some python code from file cammac_user_settings.py
will be executed in one of the few first cells of the notebook. By
default, this file is sought in $CAMMAC/jobs/ (see
cammac_user_settings.py
. If you want some control over
its content, put your own copy somewhere and set and export
environment variable CAMMAC_USER_PYTHON_CODE_DIR
accordingly